If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ), 'gf_id' => 'HOM05D000662', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000662' ), 'data_identifier' => 'HOM05D000662', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000662', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A06p34880' => 'bna', 'A09p06650' => 'bna', 'Aa31LG11G3360' => 'aar', 'Actinidia02812' => 'ach', 'Actinidia10081' => 'ach', 'Actinidia10083' => 'ach', 'Actinidia10084' => 'ach', 'Actinidia20173' => 'ach', 'Actinidia20174' => 'ach', 'Actinidia28482' => 'ach', 'Actinidia31856' => 'ach', 'Ah.07g204580' => 'amhyb', 'Ah.07g206180' => 'amhyb', 'Ah.11g048240' => 'amhyb', 'AL6G35440' => 'aly', 'Aqoxy3G04234' => 'aox', 'Aqoxy3G04238' => 'aox', 'Aqoxy5G03798' => 'aox', 'Aqoxy5G04037' => 'aox', 'Aqoxy7G03645' => 'aox', 'Aqoxy7G03646' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1VD7QP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1VJ4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.20WGQW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36XQKP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3AK7YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YD5ZW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4N1P2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6T97B7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E9N8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A3F71V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A6GVEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FK1L07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MT3DPF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MUW0JZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4USAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RKK33X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNDR2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJB1NB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TMFM41' => 'arhy', 'AT5G24090' => 'ath', 'ATR0057G099' => 'atr', 'ATR0582G236' => 'atr', 'ATR0585G003' => 'atr', 'ATR1096G045' => 'atr', 'ATR1096G062' => 'atr', 'ATR1096G094' => 'atr', 'ATR1096G132' => 'atr', 'Atru.chr5.596' => 'acertr', 'Atru.chr5.597' => 'acertr', 'Atru.chr5.598' => 'acertr', 'Atru.chr5.599' => 'acertr', 'Atru.chr6.2389' => 'acertr', 'AUR62002343' => 'cqu', 'AUR62005992' => 'cqu', 'AUR62005993' => 'cqu', 'AUR62008449' => 'cqu', 'AUR62008450' => 'cqu', 'AUR62008458' => 'cqu', 'AUR62008540' => 'cqu', 'AUR62021065' => 'cqu', 'AUR62021066' => 'cqu', 'AUR62021068' => 'cqu', 'AUR62021069' => 'cqu', 'AUR62021070' => 'cqu', 'AUR62021637' => 'cqu', 'AUR62021640' => 'cqu', 'AUR62021641' => 'cqu', 'AUR62028077' => 'cqu', 'AUR62028078' => 'cqu', 'AUR62031461' => 'cqu', 'AUR62031462' => 'cqu', 'AUR62031466' => 'cqu', 'AUR62031467' => 'cqu', 'AUR62032288' => 'cqu', 'BcaB04g19845' => 'bca', 'BcaC04g23519' => 'bca', 'BcaC04g23520' => 'bca', 'BcaNung01208' => 'bca', 'BcaNung01822' => 'bca', 'BolC7t44891H' => 'bol', 'BolC9t53656H' => 'bol', 'BraA06t26414Z' => 'bra', 'BraA09t36311Z' => 'bra', 'C07p43640' => 'bna', 'C09p07420' => 'bna', 'CAN.G108.5' => 'can', 'CAN.G442.6' => 'can', 'CAN.G523.43' => 'can', 'CAN.G602.7' => 'can', 'CAN.G78.139' => 'can', 'CAN.G78.144' => 'can', 'CAN.G80.36' => 'can', 'CAN.G91.6' => 'can', 'CANSAT21G0358' => 'cansat', 'CANSAT21G0437' => 'cansat', 'CANSAT21G1189' => 'cansat', 'CANSAT21G1362' => 'cansat', 'CANSAT56G4144' => 'cansat', 'CANSAT94G0011' => 'cansat', 'CANSAT94G0020' => 'cansat', 'CARHR189500' => 'chi', 'Carub.0006s2181' => 'cru', 'Ca_04908_v3' => 'car', 'Ca_10696_v3' => 'car', 'Ca_10697_v3' => 'car', 'Ca_10698_v3' => 'car', 'Ca_24220_v3' => 'car', 'Ca_24226_v3' => 'car', 'Ca_25856_v3' => 'car', 'Cc00_g05840' => 'ccan', 'Cc00_g05850' => 'ccan', 'Cc00_g24350' => 'ccan', 'Cc00_g32100' => 'ccan', 'Cc00_g35710' => 'ccan', 'Cc02_g02070' => 'ccan', 'Cc02_g26320' => 'ccan', 'Cc02_g26340' => 'ccan', 'Cc03_g14190' => 'ccan', 'Cc03_g14210' => 'ccan', 'Cc03_g14220' => 'ccan', 'Cc03_g14230' => 'ccan', 'Cc05_g00350' => 'ccan', 'Cc05_g00740' => 'ccan', 'Cc05_g00750' => 'ccan', 'Cc05_g00760' => 'ccan', 'Cc05_g00770' => 'ccan', 'Cc05_g00780' => 'ccan', 'Cc05_g00800' => 'ccan', 'Cc05_g00810' => 'ccan', 'Cc11_g00400' => 'ccan', 'Cc11_g00410' => 'ccan', 'Cc11_g02530' => 'ccan', 'Cc11_g04040' => 'ccan', 'Cc11_g09370' => 'ccan', 'CDE02G1052' => 'cde', 'CDE02G2178' => 'cde', 'CDE11G0184' => 'cde', 'CDE11G0248' => 'cde', 'CDE11G0401' => 'cde', 'CDE11G0639' => 'cde', 'CDE11G0647' => 'cde', 'CDE11G0727' => 'cde', 'CDE11G0756' => 'cde', 'Cfa003852' => 'cfa', 'Cfa003853' => 'cfa', 'Cfa003854' => 'cfa', 'Cfa003856' => 'cfa', 'Cfa003857' => 'cfa', 'Cfa003858' => 'cfa', 'Cfa008081' => 'cfa', 'Cfa016339' => 'cfa', 'Cfa016340' => 'cfa', 'Cfa016341' => 'cfa', 'Cfa016342' => 'cfa', 'Cfa016343' => 'cfa', 'Cfa016344' => 'cfa', 'Cfa023161' => 'cfa', 'Cfa024430' => 'cfa', 'Ciclev10005491m.g' => 'ccl', 'Ciclev10005522m.g' => 'ccl', 'Ciclev10024434m.g' => 'ccl', 'CiPaw.01G069200' => 'cil', 'CiPaw.01G069300' => 'cil', 'CiPaw.01G069900' => 'cil', 'CiPaw.01G070000' => 'cil', 'CiPaw.01G070100' => 'cil', 'CiPaw.02G036400' => 'cil', 'CiPaw.02G036500' => 'cil', 'CiPaw.02G036600' => 'cil', 'CiPaw.02G036700' => 'cil', 'CiPaw.05G259300' => 'cil', 'CiPaw.06G005900' => 'cil', 'CiPaw.06G006000' => 'cil', 'CiPaw.06G006100' => 'cil', 'ClCG00G004270' => 'cla', 'ClCG00G004280' => 'cla', 'ClCG01G000630' => 'cla', 'ClCG01G000710' => 'cla', 'ClCG05G001150' => 'cla', 'ClCG05G001170' => 'cla', 'ClCG05G008580' => 'cla', 'ClCG06G006700' => 'cla', 'COL.COLO4_04248' => 'col', 'COL.COLO4_04412' => 'col', 'COL.COLO4_06368' => 'col', 'COL.COLO4_06369' => 'col', 'COL.COLO4_06370' => 'col', 'COL.COLO4_12224' => 'col', 'COL.COLO4_14904' => 'col', 'COL.COLO4_19704' => 'col', 'COL.COLO4_23190' => 'col', 'COL.COLO4_24778' => 'col', 'COL.COLO4_27192' => 'col', 'COL.COLO4_29106' => 'col', 'COL.COLO4_30223' => 'col', 'COL.COLO4_30240' => 'col', 'COL.COLO4_34394' => 'col', 'COL.COLO4_34396' => 'col', 'COL.COLO4_34401' => 'col', 'COL.COLO4_34404' => 'col', 'Cpa.g.c34078' => 'cpa', 'Cpa.g.c43583' => 'cpa', 'Cpa.g.c46358' => 'cpa', 'Cpa.g.sc1833.1' => 'cpa', 'Cpa.g.sc184.10' => 'cpa', 'Cpa.g.sc3.19' => 'cpa', 'Cpa.g.sc3.20' => 'cpa', 'Cpa.g.sc3.21' => 'cpa', 'Cpa.g.sc3.22' => 'cpa', 'Cpa.g.sc3.23' => 'cpa', 'Cpa.g.sc3.24' => 'cpa', 'Cpa.g.sc3.30' => 'cpa', 'Cpa.g.sc80.46' => 'cpa', 'CsaV3_2G013100' => 'csa', 'CsaV3_3G008480' => 'csa', 'CsaV3_3G008490' => 'csa', 'CsaV3_3G008510' => 'csa', 'CsaV3_5G000810' => 'csa', 'CsaV3_5G000820' => 'csa', 'CsaV3_5G000830' => 'csa', 'CsaV3_5G000840' => 'csa', 'CSS0015363' => 'camsi', 'CSS0019548' => 'camsi', 'CSS0022637' => 'camsi', 'CSS0033576' => 'camsi', 'CSS0039187' => 'camsi', 'CSS0042915' => 'camsi', 'CSS0046079' => 'camsi', 'DCAR_006613' => 'dca', 'DCAR_006614' => 'dca', 'DCAR_010641' => 'dca', 'DCAR_010642' => 'dca', 'DCAR_010644' => 'dca', 'DCAR_016830' => 'dca', 'DCAR_016831' => 'dca', 'DCAR_021720' => 'dca', 'DCAR_025225' => 'dca', 'DCAR_025230' => 'dca', 'Dinv28354' => 'din', 'Dinv32533' => 'din', 'Dinv32534' => 'din', 'Dinv32537' => 'din', 'Dinv32538' => 'din', 'Dinv32539' => 'din', 'Dinv35291' => 'din', 'Dinv35295' => 'din', 'Dinv43874' => 'din', 'Dinv43876' => 'din', 'Dinv43880' => 'din', 'Dinv43881' => 'din', 'Dinv43882' => 'din', 'Duzib084G0154' => 'dzi', 'Duzib084G0158' => 'dzi', 'Duzib084G0373' => 'dzi', 'Duzib133G0674' => 'dzi', 'Duzib138G0288' => 'dzi', 'Duzib138G0406' => 'dzi', 'Duzib138G0532' => 'dzi', 'Duzib138G1176' => 'dzi', 'Duzib205G0840' => 'dzi', 'Duzib205G2055' => 'dzi', 'ECA233G2580' => 'eca', 'ECA236G0502' => 'eca', 'ECA236G3119' => 'eca', 'ECA236G3451' => 'eca', 'ECA238G3643' => 'eca', 'ECA240G2051' => 'eca', 'ECA247G1638' => 'eca', 'EL10Ac3g05172' => 'bvu', 'EL10Ac3g05368' => 'bvu', 'EL10Ac3g05369' => 'bvu', 'EL10Ac5g10499' => 'bvu', 'EL10Ac5g11061' => 'bvu', 'Eucgr.A02678' => 'egr', 'Eucgr.A02680' => 'egr', 'Eucgr.E00086' => 'egr', 'Eucgr.E00089' => 'egr', 'Eucgr.E00090' => 'egr', 'Eucgr.E00091' => 'egr', 'Eucgr.H01459' => 'egr', 'Eucgr.H04884' => 'egr', 'Eucgr.K00308' => 'egr', 'Eucgr.K00311' => 'egr', 'Eucgr.K00313' => 'egr', 'Eucgr.L03478' => 'egr', 'FAN01G0585' => 'fan', 'FAN01G1934' => 'fan', 'FAN01G2065' => 'fan', 'FAN03G0365' => 'fan', 'FAN03G1435' => 'fan', 'FAN03G2079' => 'fan', 'FAN03G2935' => 'fan', 'FAN06G0534' => 'fan', 'FAN06G1119' => 'fan', 'FAN06G1812' => 'fan', 'FAN06G1887' => 'fan', 'FAN06G2477' => 'fan', 'FAN06G2992' => 'fan', 'FAN06G3064' => 'fan', 'FAN06G3288' => 'fan', 'FAN06G3987' => 'fan', 'FAN06G4273' => 'fan', 'FAN10G1222' => 'fan', 'FAN10G1358' => 'fan', 'FAN10G1798' => 'fan', 'FAN10G1805' => 'fan', 'FAN10G2076' => 'fan', 'FAN10G2812' => 'fan', 'FAN10G3080' => 'fan', 'FAN10G3303' => 'fan', 'FAN10G4157' => 'fan', 'FAN14G2591' => 'fan', 'FAN28G1882' => 'fan', 'FvH4_7g15560' => 'fve', 'FvH4_7g15680' => 'fve', 'FvH4_7g30230' => 'fve', 'FvH4_7g30780' => 'fve', 'Glyma.01G055200' => 'gma', 'Glyma.02G113600' => 'gma', 'Glyma.03G254300' => 'gma', 'Glyma.05G075000' => 'gma', 'Glyma.07G005801' => 'gma', 'Glyma.07G061600' => 'gma', 'Glyma.08G299700' => 'gma', 'Glyma.08G300300' => 'gma', 'Glyma.09G126200' => 'gma', 'Glyma.10G227700' => 'gma', 'Glyma.12G156600' => 'gma', 'Glyma.15G015100' => 'gma', 'Glyma.16G173000' => 'gma', 'Glyma.18G120200' => 'gma', 'Glyma.18G120700' => 'gma', 'Glyma.19G076200' => 'gma', 'Glyma.20G035400' => 'gma', 'Glyma.20G164600' => 'gma', 'Glyma.20G164700' => 'gma', 'Glyma.20G164900' => 'gma', 'Gohir.A03G050800' => 'ghi', 'Gohir.A04G029800' => 'ghi', 'Gohir.A04G029904' => 'ghi', 'Gohir.A08G097500' => 'ghi', 'Gohir.A08G127300' => 'ghi', 'Gohir.A12G105600' => 'ghi', 'Gohir.A12G115300' => 'ghi', 'Gohir.A12G254900' => 'ghi', 'Gohir.A12G254933' => 'ghi', 'Gohir.A13G145450' => 'ghi', 'Gohir.D03G116750' => 'ghi', 'Gohir.D05G357000' => 'ghi', 'Gohir.D05G357200' => 'ghi', 'Gohir.D08G108700' => 'ghi', 'Gohir.D08G148700' => 'ghi', 'Gohir.D12G109500' => 'ghi', 'Gohir.D12G118800' => 'ghi', 'Gohir.D12G254300' => 'ghi', 'Gohir.D12G254400' => 'ghi', 'Gohir.D13G150401' => 'ghi', 'Gorai.003G123100' => 'gra', 'Gorai.004G116500' => 'gra', 'Gorai.004G154400' => 'gra', 'Gorai.008G118600' => 'gra', 'Gorai.008G128500' => 'gra', 'Gorai.008G272000' => 'gra', 'Gorai.008G272100' => 'gra', 'Gorai.009G389400' => 'gra', 'Gorai.009G389700' => 'gra', 'Gorai.013G168100' => 'gra', 'GSVIVG01027012001' => 'vvi', 'GSVIVG01027013001' => 'vvi', 'GSVIVG01027014001' => 'vvi', 'GSVIVG01027016001' => 'vvi', 'GSVIVG01027022001' => 'vvi', 'GSVIVG01027026001' => 'vvi', 'GSVIVG01027027001' => 'vvi', 'GSVIVG01028750001' => 'vvi', 'GSVIVG01028752001' => 'vvi', 'GSVIVG01028753001' => 'vvi', 'GSVIVG01032411001' => 'vvi', 'HanXRQChr04g0102051' => 'han', 'HanXRQChr04g0112801' => 'han', 'HanXRQChr04g0112811' => 'han', 'HanXRQChr04g0112821' => 'han', 'HanXRQChr04g0112831' => 'han', 'HanXRQChr04g0112841' => 'han', 'HanXRQChr04g0112851' => 'han', 'HanXRQChr04g0112861' => 'han', 'HanXRQChr04g0112871' => 'han', 'HanXRQChr04g0112881' => 'han', 'HanXRQChr06g0166931' => 'han', 'HanXRQChr09g0253131' => 'han', 'Haze_00090' => 'cav', 'Haze_15583' => 'cav', 'Haze_15585' => 'cav', 'Haze_15588' => 'cav', 'Haze_15590' => 'cav', 'Haze_15591' => 'cav', 'Haze_15595' => 'cav', 'Haze_15596' => 'cav', 'Haze_15597' => 'cav', 'Haze_15598' => 'cav', 'Haze_27394' => 'cav', 'Hma1.2p1_0327F.1_g126620' => 'hma', 'Hma1.2p1_0384F.1_g140750' => 'hma', 'Hma1.2p1_0623F.1_g191190' => 'hma', 'Hma1.2p1_3563F.1_g336790' => 'hma', 'Hma1.2p1_3617F.1_g337065' => 'hma', 'HPP92_003346' => 'vpl', 'HPP92_003347' => 'vpl', 'Hund11697' => 'sun', 'Hund21059' => 'sun', 'Lalb_Chr01g0009671' => 'lal', 'Lalb_Chr02g0141361' => 'lal', 'Lalb_Chr06g0161431' => 'lal', 'Lalb_Chr10g0096521' => 'lal', 'Lalb_Chr14g0373361' => 'lal', 'Lalb_Chr21g0305351' => 'lal', 'Lalb_Chr21g0305361' => 'lal', 'Lalb_Chr21g0305371' => 'lal', 'Lalb_Chr21g0317551' => 'lal', 'Lj1g0009167' => 'lja', 'Lj1g0013482' => 'lja', 'Lj1P1011T24' => 'lonja', 'Lj2g0000013' => 'lja', 'Lj2g0018868' => 'lja', 'Lj3g0002176' => 'lja', 'Lj3g0023389' => 'lja', 'Lj3g0026062' => 'lja', 'Lj3P914T63' => 'lonja', 'Lj5g0001195' => 'lja', 'Lj5g0004169' => 'lja', 'Lj5g0018714' => 'lja', 'Lj6P632T18' => 'lonja', 'Lj7C506T2' => 'lonja', 'Lj7C506T3' => 'lonja', 'Lj9A590T51' => 'lonja', 'Lj9A590T53' => 'lonja', 'Lj9A595G52' => 'lonja', 'Lj9A595T51' => 'lonja', 'Lj9C590G8' => 'lonja', 'Lj9C590T4' => 'lonja', 'Lj9C595G2' => 'lonja', 'Lj9C595T14' => 'lonja', 'Lsat_1_v5_gn_2_133681' => 'lsa', 'Lsat_1_v5_gn_2_134460' => 'lsa', 'Lsat_1_v5_gn_2_134540' => 'lsa', 'Lsat_1_v5_gn_7_10560' => 'lsa', 'Lsat_1_v5_gn_7_10600' => 'lsa', 'Lsat_1_v5_gn_8_56941' => 'lsa', 'Lsat_1_v5_gn_8_56981' => 'lsa', 'Lsat_1_v5_gn_8_57000' => 'lsa', 'Lsat_1_v5_gn_9_11660' => 'lsa', 'Lsat_1_v5_gn_9_57201' => 'lsa', 'Manes.02G188701' => 'mes', 'Manes.02G188800' => 'mes', 'Manes.05G027700' => 'mes', 'Manes.06G155300' => 'mes', 'Manes.06G155400' => 'mes', 'Manes.06G155500' => 'mes', 'Manes.06G155600' => 'mes', 'Manes.07G097300' => 'mes', 'Manes.10G048300' => 'mes', 'Manes.10G048400' => 'mes', 'Manes.10G048500' => 'mes', 'Mapoly0015s0159' => 'mpo', 'Mapoly0023s0114' => 'mpo', 'Mapoly0031s0021' => 'mpo', 'Mapoly0110s0035' => 'mpo', 'Mapoly0118s0041' => 'mpo', 'Mapoly0196s0008' => 'mpo', 'Mapoly0352s0004' => 'mpo', 'MBI07_g06322_MAGBIO' => 'mbi', 'MBI07_g06323_MAGBIO' => 'mbi', 'MBI07_g06324_MAGBIO' => 'mbi', 'MBI07_g06325_MAGBIO' => 'mbi', 'MBI07_g06326_MAGBIO' => 'mbi', 'MBI07_g32652_MAGBIO' => 'mbi', 'MBI10_g00738_MAGBIO' => 'mbi', 'MD01G1071700' => 'mdo', 'MD01G1211800' => 'mdo', 'MD01G1212900' => 'mdo', 'MD01G1213100' => 'mdo', 'MD01G1213300' => 'mdo', 'MD07G1129800' => 'mdo', 'MD07G1282300' => 'mdo', 'MD07G1282500' => 'mdo', 'MD07G1282800' => 'mdo', 'MD07G1282900' => 'mdo', 'Medtr0027s0260' => 'mtr', 'Medtr1g099290' => 'mtr', 'Medtr1g099310' => 'mtr', 'Medtr1g099320' => 'mtr', 'Medtr1g099350' => 'mtr', 'Medtr2g040650' => 'mtr', 'Medtr2g040690' => 'mtr', 'Medtr2g040740' => 'mtr', 'Medtr2g040830' => 'mtr', 'Medtr2g040850' => 'mtr', 'Medtr2g040870' => 'mtr', 'Medtr2g040880' => 'mtr', 'Medtr2g040890' => 'mtr', 'Medtr2g040900' => 'mtr', 'Medtr2g102020' => 'mtr', 'Medtr4g063180' => 'mtr', 'Medtr4g077310' => 'mtr', 'Medtr5g043550' => 'mtr', 'Medtr6g023340' => 'mtr', 'Medtr7g116350' => 'mtr', 'Medtr7g116850' => 'mtr', 'Medtr8g055940' => 'mtr', 'Medtr8g467650' => 'mtr', 'MELO3C005858.2' => 'cme', 'MELO3C005859.2' => 'cme', 'MELO3C006069.2' => 'cme', 'MELO3C006070.2' => 'cme', 'MELO3C006072.2' => 'cme', 'MELO3C006965.2' => 'cme', 'MELO3C006967.2' => 'cme', 'MELO3C026772.2' => 'cme', 'Migut.B01811' => 'egut', 'Migut.F00256' => 'egut', 'Migut.H01000' => 'egut', 'Migut.L00344' => 'egut', 'Migut.N01998' => 'egut', 'MSTRG.8093' => 'ama', 'MSTRG.8486' => 'ama', 'MSTRG.8488' => 'ama', 'MSTRG.8688' => 'ama', 'Nitab4.5_0000200g0050' => 'nta', 'Nitab4.5_0000200g0090' => 'nta', 'Nitab4.5_0000305g0290' => 'nta', 'Nitab4.5_0002637g0040' => 'nta', 'Nitab4.5_0002926g0010' => 'nta', 'Nitab4.5_0002926g0030' => 'nta', 'Nitab4.5_0003779g0100' => 'nta', 'Nitab4.5_0004403g0030' => 'nta', 'Nitab4.5_0004479g0010' => 'nta', 'Nitab4.5_0004748g0020' => 'nta', 'Nitab4.5_0006014g0010' => 'nta', 'Nitab4.5_0008735g0020' => 'nta', 'Nitab4.5_0008852g0010' => 'nta', 'Nn2g12505' => 'nnu', 'Nn2g12510' => 'nnu', 'Nn2g15632' => 'nnu', 'Nn7g37335' => 'nnu', 'Nn7g37336' => 'nnu', 'Nn8g40441' => 'nnu', 'Nn8g40443' => 'nnu', 'Nn8g40445' => 'nnu', 'Nn8g40446' => 'nnu', 'Nn8g40449' => 'nnu', 'Nn8g40454' => 'nnu', 'Oeu025186.1' => 'oeu', 'Oeu037119.1' => 'oeu', 'Oeu037121.1' => 'oeu', 'Oeu054361.1' => 'oeu', 'Oeu054362.1' => 'oeu', 'Oeu054364.1' => 'oeu', 'Oeu054371.1' => 'oeu', 'Oeu060474.1' => 'oeu', 'Oeu060479.1' => 'oeu', 'Oeu060482.1' => 'oeu', 'Oeu063670.1' => 'oeu', 'Oeu063671.1' => 'oeu', 'Os01g0303100' => 'osa', 'Os01g0660200' => 'osa', 'Os01g0687400' => 'osa', 'Os01g0691000' => 'osa', 'Os01g0860400' => 'osa', 'Os01g0860500' => 'osa', 'Os04g0347200' => 'osa', 'Os05g0247100' => 'osa', 'Os05g0247800' => 'osa', 'Os05g0248200' => 'osa', 'Os06g0356800' => 'osa', 'Os07g0632000' => 'osa', 'Os08g0518800' => 'osa', 'Os08g0518900' => 'osa', 'Os08g0519300' => 'osa', 'Os11g0700900' => 'osa', 'Os11g0701000' => 'osa', 'Os11g0701100' => 'osa', 'Os11g0701200' => 'osa', 'Os11g0701400' => 'osa', 'Os11g0701500' => 'osa', 'Os11g0701600' => 'osa', 'Os11g0701800' => 'osa', 'Os11g0701900' => 'osa', 'Os11g0702100' => 'osa', 'Os11g0702200' => 'osa', 'Peaxi162Scf00345g00022' => 'pax', 'Peaxi162Scf00403g00836' => 'pax', 'Peaxi162Scf00403g00837' => 'pax', 'Peaxi162Scf00403g00838' => 'pax', 'Peaxi162Scf00403g00840' => 'pax', 'Peaxi162Scf00585g00072' => 'pax', 'Peaxi162Scf00585g00083' => 'pax', 'Peaxi162Scf00585g00097' => 'pax', 'Peaxi162Scf00904g00048' => 'pax', 'Peaxi162Scf01254g00005' => 'pax', 'Peaxi162Scf01254g00009' => 'pax', 'PGR042G3301' => 'pgr', 'PGR102G2075' => 'pgr', 'PGR128G0003' => 'pgr', 'PGR142G0183' => 'pgr', 'PGR142G1979' => 'pgr', 'PGR142G2039' => 'pgr', 'PGR142G2355' => 'pgr', 'PGSC0003DMG400000073' => 'stu', 'PGSC0003DMG400000074' => 'stu', 'PGSC0003DMG400004391' => 'stu', 'PGSC0003DMG400006591' => 'stu', 'PGSC0003DMG400033882' => 'stu', 'Phvul.002G069300' => 'pvu', 'Phvul.003G049000' => 'pvu', 'Phvul.003G049100' => 'pvu', 'Phvul.004G101500' => 'pvu', 'Phvul.006G109000' => 'pvu', 'Phvul.007G077800' => 'pvu', 'Phvul.011G166900' => 'pvu', 'Phvul.011G167000' => 'pvu', 'Phvul.011G167300' => 'pvu', 'Potri.002G165700' => 'ptr', 'Potri.002G242000' => 'ptr', 'Potri.012G033866' => 'ptr', 'Potri.012G033899' => 'ptr', 'Potri.012G033932' => 'ptr', 'Potri.014G091600' => 'ptr', 'Potri.014G091700' => 'ptr', 'Potri.014G092800' => 'ptr', 'Potri.014G092932' => 'ptr', 'Potri.015G023900' => 'ptr', 'Potri.015G024000' => 'ptr', 'Potri.015G024100' => 'ptr', 'Potri.015G024150' => 'ptr', 'Potri.015G024200' => 'ptr', 'Prupe.2G177900' => 'ppe', 'Prupe.2G179300' => 'ppe', 'Prupe.2G181400' => 'ppe', 'Prupe.2G181500' => 'ppe', 'Prupe.2G181600' => 'ppe', 'Prupe.2G304600' => 'ppe', 'Prupe.2G305100' => 'ppe', 'Prupe.2G305200' => 'ppe', 'Psat1g084840' => 'psa', 'Psat1g131280' => 'psa', 'Psat1g169040' => 'psa', 'Psat2g128240' => 'psa', 'Psat3g005200' => 'psa', 'Psat4g171240' => 'psa', 'Psat4g175600' => 'psa', 'Psat4g175720' => 'psa', 'Psat4g177760' => 'psa', 'Psat5g298520' => 'psa', 'Psat6g166120' => 'psa', 'Psat6g194680' => 'psa', 'Psat6g194720' => 'psa', 'Psat6g194800' => 'psa', 'PSO210G2546' => 'pso', 'PSO210G4026' => 'pso', 'PSO210G4404' => 'pso', 'QL04p007632' => 'qlo', 'QL04p036995' => 'qlo', 'QL04p059132' => 'qlo', 'QL04p059186' => 'qlo', 'QL07p036075' => 'qlo', 'QL09p011657' => 'qlo', 'QL09p011661' => 'qlo', 'QL09p011670' => 'qlo', 'QL09p011679' => 'qlo', 'QL09p011686' => 'qlo', 'QL09p011691' => 'qlo', 'QL09p011713' => 'qlo', 'QL09p011995' => 'qlo', 'QL12p008347' => 'qlo', 'RcHm_v2.0_Chr1g0358211' => 'rch', 'RcHm_v2.0_Chr1g0358221' => 'rch', 'RcHm_v2.0_Chr1g0358231' => 'rch', 'RcHm_v2.0_Chr1g0358401' => 'rch', 'RcHm_v2.0_Chr1g0358411' => 'rch', 'RcHm_v2.0_Chr1g0378291' => 'rch', 'RcHm_v2.0_Chr1g0379611' => 'rch', 'RcHm_v2.0_Chr1g0379721' => 'rch', 'RcHm_v2.0_Chr2g0139211' => 'rch', 'RcHm_v2.0_Chr2g0156261' => 'rch', 'RcHm_v2.0_Chr2g0156271' => 'rch', 'RcHm_v2.0_Chr3g0487471' => 'rch', 'RcHm_v2.0_Chr4g0400341' => 'rch', 'RcHm_v2.0_Chr5g0069621' => 'rch', 'Rhsim01G0168600' => 'rsi', 'Rhsim03G0199000' => 'rsi', 'Rhsim09G0202800' => 'rsi', 'Rhsim09G0203000' => 'rsi', 'Rhsim09G0203100' => 'rsi', 'Sabra02G0145800' => 'sbr', 'Sabra12G0023000' => 'sbr', 'Sabra14G0066500' => 'sbr', 'Sabra14G0066600' => 'sbr', 'Sabra14G0067300' => 'sbr', 'Sabra14G0067400' => 'sbr', 'Sabra15G0017800' => 'sbr', 'Sabra15G0017900' => 'sbr', 'Sabra15G0018200' => 'sbr', 'Sabra15G0018500' => 'sbr', 'Sabra15G0018600' => 'sbr', 'Sabra15G0018700' => 'sbr', 'Sabra15G0020200' => 'sbr', 'Sabra15G0020300' => 'sbr', 'Sabra15G0020400' => 'sbr', 'Sabra15G0020700' => 'sbr', 'Sabra15G0021000' => 'sbr', 'Sabra15G0021100' => 'sbr', 'Sabra15G0021200' => 'sbr', 'SalBow2G0643' => 'sbo', 'SalBow2G0693' => 'sbo', 'SalBow2G1096' => 'sbo', 'SalBow2G3089' => 'sbo', 'SalBow2G3181' => 'sbo', 'SalBow2G3542' => 'sbo', 'SalBow3G2060' => 'sbo', 'SalBow4G1507' => 'sbo', 'SalBow4G1585' => 'sbo', 'SalBow5G0984' => 'sbo', 'SalBow6G2601' => 'sbo', 'Sc05g0001280' => 'sci', 'Sc13g0009710' => 'sci', 'Sc19g0000880' => 'sci', 'Sc19g0001060' => 'sci', 'Sc23g0002470' => 'sci', 'Sc23g0002480' => 'sci', 'Sc25g0000770' => 'sci', 'Sc25g0000780' => 'sci', 'Sed0009792' => 'sed', 'Sed0010022' => 'sed', 'Sed0015382' => 'sed', 'Sed0015435' => 'sed', 'Sed0018119' => 'sed', 'Sed0018513' => 'sed', 'Sed0025449' => 'sed', 'SEGI_00055' => 'sgi', 'SEGI_00862' => 'sgi', 'SEGI_02413' => 'sgi', 'SEGI_02482' => 'sgi', 'SEGI_03667' => 'sgi', 'SEGI_04652' => 'sgi', 'SEGI_05953' => 'sgi', 'SEGI_08384' => 'sgi', 'SEGI_11416' => 'sgi', 'SEGI_18673' => 'sgi', 'SEGI_20795' => 'sgi', 'SEGI_24643' => 'sgi', 'SEGI_27282' => 'sgi', 'SEGI_27389' => 'sgi', 'SEGI_31585' => 'sgi', 'SEGI_33177' => 'sgi', 'SEGI_34077' => 'sgi', 'SEGI_35980' => 'sgi', 'SEGI_36687' => 'sgi', 'SGA_v2.0_scaffold10G05272' => 'sas', 'SGA_v2.0_scaffold44G16768' => 'sas', 'SHI54651' => 'shi', 'SHI55049' => 'shi', 'SMO116G0469' => 'smo', 'SMO119G0004' => 'smo', 'SMO119G0324' => 'smo', 'SMO136G0005' => 'smo', 'SMO145G0094' => 'smo', 'SMO145G0240' => 'smo', 'SMO163G0009' => 'smo', 'SMO337G0113' => 'smo', 'Solyc01g095250.1' => 'sly', 'Solyc01g095260.1' => 'sly', 'Solyc01g095310.1' => 'sly', 'Solyc05g050130.4' => 'sly', 'Sopen01g039040' => 'spe', 'Sopen01g039050' => 'spe', 'Sopen01g039100' => 'spe', 'Sopen03g003750' => 'spe', 'Sopen05g028510' => 'spe', 'Sopen05g028540' => 'spe', 'Sopen05g028560' => 'spe', 'Sp2g23230' => 'spa', 'TAR374G0919' => 'tar', 'TAR374G0930' => 'tar', 'TAR374G1163' => 'tar', 'TAR374G1368' => 'tar', 'TAR375G0018' => 'tar', 'TAR622G1291' => 'tar', 'TAR629G2740' => 'tar', 'TAR636G1548' => 'tar', 'THA.LOC104821378' => 'tha', 'Thecc.01G318500' => 'tca', 'Thecc.01G349700' => 'tca', 'Thecc.01G350600' => 'tca', 'Thecc.03G189400' => 'tca', 'Thecc.03G189500' => 'tca', 'Thecc.03G189700' => 'tca', 'Thecc.03G189900' => 'tca', 'Thecc.03G190000' => 'tca', 'Thecc.03G190200' => 'tca', 'Thecc.04G016800' => 'tca', 'Thecc.07G088000' => 'tca', 'Thecc.10G163800' => 'tca', 'Thecc.10G164100' => 'tca', 'Thecc.10G164200' => 'tca', 'Thhalv10004675m.g' => 'esa', 'TPR.G22414' => 'tpr', 'TPR.G29593' => 'tpr', 'TPR.G31816' => 'tpr', 'TPR.G32482' => 'tpr', 'TPR.G32501' => 'tpr', 'TPR.G39522' => 'tpr', 'TPR.G40576' => 'tpr', 'TPR.G4721' => 'tpr', 'TPR.G6949' => 'tpr', 'TPR.G7523' => 'tpr', 'TPR.G7758' => 'tpr', 'TPR.G7759' => 'tpr', 'TPR.G7769' => 'tpr', 'TWI12G0242' => 'twi', 'TWI23G0667' => 'twi', 'TWI23G0859' => 'twi', 'TWI23G0958' => 'twi', 'TWI60G0093' => 'twi', 'TWI60G1696' => 'twi', 'TWI75G0265' => 'twi', 'unitig_60.g25630' => 'ugi', 'unitig_60.g25631' => 'ugi', 'unitig_747.g21856' => 'ugi', 'vmacro10095' => 'vma', 'vmacro10096' => 'vma', 'vmacro20873' => 'vma', 'vmacro20874' => 'vma', 'vmacro20883' => 'vma', 'VMungo0251G0816' => 'vmu', 'VMungo0251G1058' => 'vmu', 'VMungo0251G2309' => 'vmu', 'VMungo0464G0230' => 'vmu', 'VMungo0464G0361' => 'vmu', 'VMungo0464G1042' => 'vmu', 'VMungo0464G1597' => 'vmu', 'VMungo0464G1928' => 'vmu', 'VMungo0540G2317' => 'vmu', 'VMungo0720G1430' => 'vmu', 'VMungo1127G0537' => 'vmu', 'VMungo1127G0920' => 'vmu', 'VMungo1127G1394' => 'vmu', 'VMungo1215G1454' => 'vmu', 'VMungo1309G0970' => 'vmu', 'Zm00001eb147120' => 'zma', 'Zm00001eb147140' => 'zma', 'Zm00001eb147150' => 'zma', 'Zm00001eb147160' => 'zma', 'Zm00001eb157820' => 'zma', 'Zm00001eb167340' => 'zma', 'Zm00001eb174340' => 'zma', 'Zm00001eb283260' => 'zma', 'Zm00001eb283280' => 'zma', 'Zm00001eb301490' => 'zma', 'Zm00001eb301500' => 'zma', 'Zm00001eb305260' => 'zma', 'Zm00001eb305270' => 'zma', 'Zm00001eb305280' => 'zma' ) $gf_id = 'HOM05D000662' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000662' ) $data_identifier = 'HOM05D000662' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 6, 'arhy' => (int) 19, 'ath' => (int) 1, 'atr' => (int) 7, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 5, 'bol' => (int) 2, 'bra' => (int) 2, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 1, 'cru' => (int) 1, 'car' => (int) 7, 'ccan' => (int) 25, 'cde' => (int) 9, 'cfa' => (int) 15, 'ccl' => (int) 3, 'cil' => (int) 13, 'cla' => (int) 8, 'col' => (int) 18, 'cpa' => (int) 13, 'csa' => (int) 8, 'camsi' => (int) 7, 'dca' => (int) 10, 'din' => (int) 13, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 28, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 11, 'han' => (int) 12, 'cav' => (int) 11, 'hma' => (int) 5, 'vpl' => (int) 2, 'sun' => (int) 2, 'lal' => (int) 9, 'lja' => (int) 10, 'lonja' => (int) 13, 'lsa' => (int) 10, 'mes' => (int) 11, 'mpo' => (int) 7, 'mbi' => (int) 7, 'mdo' => (int) 10, 'mtr' => (int) 23, 'cme' => (int) 8, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 12, 'osa' => (int) 26, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 9, 'ptr' => (int) 14, 'ppe' => (int) 8, 'psa' => (int) 14, 'pso' => (int) 3, 'qlo' => (int) 14, 'rch' => (int) 14, 'rsi' => (int) 5, 'sbr' => (int) 19, 'sbo' => (int) 11, 'sci' => (int) 8, 'sed' => (int) 7, 'sgi' => (int) 19, 'sas' => (int) 2, 'shi' => (int) 2, 'smo' => (int) 8, 'sly' => (int) 4, 'spe' => (int) 7, 'spa' => (int) 1, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 14, 'esa' => (int) 1, 'tpr' => (int) 13, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 5, 'vmu' => (int) 15, 'zma' => (int) 14 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb305280' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1